NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10014781

Scaffold Ga0209631_10014781


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10014781 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6681
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029591Metagenome / Metatranscriptome188Y
F030768Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0209631_100147811F029591N/ALTETTGTKFFTEFNGSVTNVSEILIGKKLNFEIEPDVNVQSTIDYNNEINRSLGGVEYSINVNPGQEVFTISFQNISSTFKSDLITMQDAIKGEAKKFVWYDGSNFNWVRLDKPMTFTEIADGRFSTQLVLRQQIQ
Ga0209631_100147814F030768AGGAGMAFVNLKDLKANVGGQLRLTLNSAGVYEEKEWQGKKFNTFKYEVIQDGTISTLDATDALKRKLDAIPQGSDFLLSWEQFTTDEGQLRNYWKAEPVSKDSANPVFENVKKSINEFDQKLQADKAVKQAVETTNTTYTNGARMGMIFNNVVKLYIANDMVWTTDEFVNNFKRVEAWVEACENPKAIPQASKPNEPVAQESVEIKEDDLPF
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