NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10134388

Scaffold Ga0209631_10134388


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10134388 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005315Metagenome405Y
F039351Metagenome164N
F073764Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0209631_101343881F073764N/AYDIPVATITKIATIVRKENLQEEEEKWEEIKDIVAACL
Ga0209631_101343882F039351AGCAGMSRIMVTGDSWSAGEWDPTLTPEETRAFAEKYSISRYLRDLGHEVAHAANPGWGDFVSLSCLMSHEIGFDFVVYVKTCATRDFKHLTPEHHRAYTTTDLFEKINLVKELEYKILDQYKHKLILLGGIEKIEPDFNCYLKIPSITEFFYPDFVDTTIFGDYTHFEKYSDDDKRGAMKLWELWERKHNFWKEHPEHFASATDQVHPNRKATKALAEFIHNHIS
Ga0209631_101343883F005315N/AFTQGEGLEKQTQAYPYLLNADIKNLAQSGASEYLITTQIEQAVKLKPNLIIVGHTSEYRWEVWDARNECQQGFIVANHILKNEKYYRNWILSEQILSNTRNTKEHKAAWHAAGMLYFSEVELVQRLWSGAVAKQILLAQRANIPMIHHCCFPHLQPLLEELTDDYIDFHLDLEKHKDMAPDNSHAGASSHRKLANMIMNKLS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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