NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209630_10092561

Scaffold Ga0209630_10092561


Overview

Basic Information
Taxon OID3300025892 Open in IMG/M
Scaffold IDGa0209630_10092561 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007750Metagenome345Y
F021299Metagenome / Metatranscriptome219N
F066838Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209630_100925611F021299N/ALCVYACLRVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLTYAIKQQNGAMHPPKQDLGG
Ga0209630_100925612F007750AGGAMAFLGDFGKFFGLGSSEEVLGDVGEFVAGKPGRFVGEAAARATDNLAGDGGISPASTADQALEQSAVSVSKRGDVPQELSTMTGTRGMTQQAGFGALAPIFNTASRFLGSKSGQIVTGVGTAVGLGGASFMGSDSRMKPVLTQSRRNKSKVRQLVNFMGIEGTANFLSQSMGVNVSPNEVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRASSTTLIKN
Ga0209630_100925614F066838GGAVGSEYFINSQELENKVRELLPSQGGAGAGFDLSASTQIIPIIDLTESAEGSNVRQDLQTSFTLDNITDFSIIETSADIVSNTGYWRVFGTSYNIMSS
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