Scaffold Ga0209630_10160259

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209630_10160259

Scaffold Ga0209630_10160259

Overview

Basic Information
Taxon OID	3300025892 Open in IMG/M
Scaffold ID	Ga0209630_10160259 Open in IMG/M
Source Dataset Name	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1133
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED46	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Helgoland, sampling site Kabeltonne
Coordinates	Lat. (^o)	54.184167	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040328	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209630_101602593	F040328	N/A	HSKGIYITRQAQPDFVTCNLKYGEVTVQLQMGWYYHEKVRDVSVVTDKGTLVWNDAENKSKWISQLIEDGRQIQHIDKNITFTESVSPLQSQIQAFIDYCENDKLPDSDMAHTKRVTYIVECMEKSLKTGEVICPSKKY

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