NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207682_10192859

Scaffold Ga0207682_10192859


Overview

Basic Information
Taxon OID3300025893 Open in IMG/M
Scaffold IDGa0207682_10192859 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)934
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000667Metagenome / Metatranscriptome949Y
F015101Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0207682_101928591F000667N/AGPFATCLADMEDTFRRAIIQVGDVSRIAVQIDLSLPALKPRIDAGETIQPAWGDFVDRLTRRYGLPAGPRVRHLKMAGPLATMVIAYRR
Ga0207682_101928592F015101GGAGMAIKGWVVHKVNRLFTRVDLPPRATPLGQAVMRRKRETEPRGGAADSLPRPQHLGAYAPLVAAIREELEQFVASHVRMHLAIAEHDRYLLTSIEVACEGDEERDLLRHFVREFKPRQIKTYIEKEVIGRLPNANAIDLAHFGGLNTAPMEGDGAPDEAYGELLAELRSSEPRPGARPFEVSLKGRWSELDANISATRDKGTSGTVPRTPLAGRTLEVEIE
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