Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10000965 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10000965 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12636
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (74.07%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

12636

Total Scaffold Genes

27 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (74.07%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F011284	Metagenome	292	N
F014488	Metagenome	262	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F025739	Metagenome / Metatranscriptome	200	Y
F100669	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_100009651	F100669	AGCAGG	MTKVIRYLRKFLHKAQVRLKQAGSLIIGYLRKIGSIVRGINKLGDSYNAKCTQNRFR
Ga0208916_1000096513	F023833	AGGA	MKSHSDQLQDIINDAMSKAASLERERCAELVQRLSDGTEDQVIKEILNEVVTAIRRLSDE
Ga0208916_1000096518	F005702	GGA	VIIFLVAFFGLLILQGVRLFAKHIDQQNYERRKFYLYVAAELEKMDKIVADGNQPKQPELMLPNKNWVGRN
Ga0208916_1000096519	F005846	AGTAGG	VPASHNEFADNTAIEGKLNGWRGWFDQETQQGYNRHGKFATNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPSNPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHYKINSIWEEMNFQNNKAGEVVWEGFVMKAMDDGKYPFITNPNYCSPAWQKQRIRW
Ga0208916_100009652	F007164	N/A	MSEKQIGMELQKTVRLLDKAKQNAIEQMGEAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKTPAQWTPAQRTQFVEEARPIVEAYKEAGGEL
Ga0208916_1000096522	F011284	AGCAG	MTSQQSVEKATQKHFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCNLIYTTLTGQTKPPL
Ga0208916_1000096524	F025739	GGTGG	VPRPAEKEMMNKLLTTAGFVTRKWILGYIVASLICGCATTRPYDIGEVPNQDSITDYIMRWDKLDRSKATPEEYRQLFGQTLKTISRLVEENERLRKRLDQ
Ga0208916_100009654	F014488	GGA	MNHHQGQDPADSILASYTPNMADHIDTLEDRVKERLAQMKAMNPSIDLDQLAKLTAEVVEQTIKHEGDSQMLRHRRDDTLDEALLALASNRSPDSLTSIAKRYINPSTGKPYTRAAISARLTELSQRTGLVLRIQRSERVRQIYKERALRVHKKRREECPKWNAEAWAKGIKKRGKKR
Ga0208916_100009656	F024265	N/A	MNESYVTAEAKAKGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNKIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10000965

Overview

Ecosystem & Geography

Associated Families

Sequences