NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10001857

Scaffold Ga0208916_10001857


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10001857 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8893
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002149Metagenome / Metatranscriptome589Y
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000185714F010603AGGAGMANEFVRSQRKAKGKAIRFDTQNQTNVFEITASSSGGTVNTVATSPASLNVTLNGTSYRIALHT
Ga0208916_1000185715F004760N/AVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSQYTPDSIKRAAIRRK
Ga0208916_100018572F002149AGAAGGMTAVEYIEQSGVPEAMWPNLAEWFGWFEKQGMVGIVRDNDGIAGVALARCIKDGQKPNHYVHSEDGENVFVDLTISSKGAKSLGGLLLLLAERFGPRKRITFNRSGKPRSYDYMSFMRKALR
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