Scaffold Ga0208916

Basic Information
Taxon OID	3300025896 Open in IMG/M
Scaffold ID	Ga0208916_10002409 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0208916_10002409 Open in IMG/M

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7655
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

7655

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (84.21%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F004010	Metagenome / Metatranscriptome	457	Y
F010983	Metagenome / Metatranscriptome	296	Y
F037193	Metagenome / Metatranscriptome	168	Y
F039993	Metagenome / Metatranscriptome	162	Y
F041081	Metagenome	160	N
F102823	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208916_1000240914	F003304	AGGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIANDCPKLSDDAGVFCAFDEGAYLDRKPDMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDMMQLATSIQYDDAKLKGLGR
Ga0208916_1000240915	F039993	AGGA	MKLALSWICYHIGNITSLTLMRLGHGYGFYNRMMIWSSALDKDGKIWKDAK
Ga0208916_1000240917	F041081	AGGA	MIMEDVSVDFEFNGEKYTAYGNAEIDTITEDIGPVGYREHCFAEVVNNVVMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0208916_1000240918	F002009	AGGAGG	MNAPTIQEMGNAAQEIVWRVMGKGSDKSAYGDWLVKDRPTHDYHIARAIRHLATAQMQLHKSSPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL
Ga0208916_1000240919	F010983	N/A	HTEMENILLGRSCSTDEVLKPYIETFRKWASENVEKTHWCERALVGHGYAGRCDAYVRLKGIGDAIIDLKNRKVNKKYNTPPFYPTDAQQLWAYRNASENPKAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPTGMKL
Ga0208916_100024094	F102823	AGG	MSALYDWIVVGAGLAIGKLLVAITVITVITAILAVFFIIEEKTK
Ga0208916_100024096	F037193	GGTGG	MKSKDELAMQVKKEWDNQNLRWKLWLEAGGFTTEIFCYSSAEEEYSKCVRELVDHAYQMQSV
Ga0208916_100024098	F004010	AGGAG	MLGKDVSKNMHELAMDNKKKGKERGAGGKPRSREQMIAIALSAAGKSKPRKFRMRSGS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208916_10002409

Overview

Ecosystem & Geography

Associated Families

Sequences