NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10002637

Scaffold Ga0208916_10002637


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10002637 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7309
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002707Metagenome535Y
F004667Metagenome428Y
F009514Metagenome316N
F017297Metagenome241Y
F048999Metagenome147N
F054866Metagenome139Y
F093536Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_1000263711F002707AGGMTQIEALTQCLVLALVAPDDQKAQKASDLAEQIAHGLTVDQVEQCKADALDCLERVGV
Ga0208916_1000263714F054866AGGMSKYIITHGSIAAVQYVTLPDGNKVIVTDARDGSEIELPKLPLEVQAAVNRQFVTIFALPYDSRQGFIDKSIPFDVEVTE
Ga0208916_1000263717F093536AGGMQTTPNNFHSMRGHVADGCVILSPSGKQFTLKNTLKGWIVYGADNLPISGHLPSAYDVEYFVVNGLQNS
Ga0208916_1000263718F048999AGGMLTISLHQKTDNDGWQTIKSLPIDSVQWGKFDRSWIDTLMQSGSMVITIGHTMYSIDKN
Ga0208916_1000263719F009514AGGMTKQQILALQSIGKGIIEAANIDSIGAPSGVIYSALMSHGATFNQFQQIMSTLVRHGFLSHDDDSSTYHATEAGLQWANKV
Ga0208916_1000263723F017297AGGMKITEQKNGNYTTFERVSHNGYYIVKLYKRGELADKIMTDTYRAARDYLRSFNLIAKNG
Ga0208916_1000263724F004667AGGMARPPKVDTIQFRRKLDNPKLQILLSAGQGNISHGFENLLILYQHLHCLGYRTDSPLESIGLVTNLSEKKRDSHNPSESVGNDIRNV
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