NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207692_10183081

Scaffold Ga0207692_10183081


Overview

Basic Information
Taxon OID3300025898 Open in IMG/M
Scaffold IDGa0207692_10183081 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1222
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005719Metagenome / Metatranscriptome392Y
F007338Metagenome353Y
F026448Metagenome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0207692_101830812F007338GGCGGMAEPLERNSLELRMAFHNAVSSFQDWTANVAEPKVRLHGRFRPISEVCEEVANLSNLLPEFIRSILYKETKADDDVFALKLDETYRGAGRHLLRLIEMRKDEIRRRRALKSQPLNHKSGR
Ga0207692_101830813F005719N/AMTIDLTRDEIWFLQALRAAGERGRIVSAFACNAGLARLLEVQYVTKQPQSERKSLYVITHRGRQALENAPQ
Ga0207692_101830814F026448GGAGMPREEIRSARSTGPTGSEFFNAVQEMSRDWMGRATAEVELGLKLSKKLTAAHSVPDAITAYQEWLSEEMNARAED
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