NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207710_10128540

Scaffold Ga0207710_10128540


Overview

Basic Information
Taxon OID3300025900 Open in IMG/M
Scaffold IDGa0207710_10128540 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1215
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049870Metagenome146Y
F062024Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0207710_101285401F062024N/APKLTVRETPLALTGASIALLLVAAGTSFYKHDYRHGIMCFLVATVLGFVFLRKRKVALVVSGLSCILALGGLGFPFHPSFPGLVLLLGSAAALYLTVRWQYKKYPYLSFKHAHTLFEGEEVCLRRTHALRLKHEN
Ga0207710_101285402F049870N/ALERPHRAEVHLMFAELLRSTGALERAASECEITHRLDPDLPTDCYVAYTYLGDLARARQEIDRSPGEFSSFLLGHVLLREGKIEEALPKLKILPAGSNYEVVSECWPDSSTSKCLALVSRSESEFLRLPDPDAWYFGAALFASLGKKDSAIRLLDADAKLNFCVYPAVDHDPMFDKIRQSPEFKAARQVGIDCQRRFAPYSQIQIQ
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