NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207647_10007983

Scaffold Ga0207647_10007983


Overview

Basic Information
Taxon OID3300025904 Open in IMG/M
Scaffold IDGa0207647_10007983 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7609
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011852Metagenome / Metatranscriptome286Y
F080214Metagenome115N
F082926Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0207647_1000798313F011852GGAMRMPLVSYFVVMGATLTLALIFISNRIEPLGSPVPTSQIVGLAKPYMPEPERSPYAITGTNFAAAYKPAAARAAAETKPARRADSLQQQPAADTEARRVPRWKHIAQNPIAALMGIH
Ga0207647_1000798315F082926GGAGGMPDISATEQPEQSHIVTWKVISIGTAIVTVVFLFLWL
Ga0207647_100079836F080214AGGAMNAANAGPRDPVAMFGMARKESRKSILLRFMEALKESRRREAQRVIATYAHLLADRDTRDDDNQH
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