NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207647_10019745

Scaffold Ga0207647_10019745


Overview

Basic Information
Taxon OID3300025904 Open in IMG/M
Scaffold IDGa0207647_10019745 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4528
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004830Metagenome / Metatranscriptome422Y
F019542Metagenome / Metatranscriptome229Y
F063968Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207647_100197452F019542AGGMIVETPVDSEYCSARQNLQAQLKQHGFRLDSQHGGELAQALPMEVLGMAFEDFEHNRGNAATLWELHPAIVTLH
Ga0207647_100197453F063968N/AMNDKVKSPGRIYLTCMTILATLTAFGCSGQDFGPLQPKPEDLCKCLPFEPDIADYRHIAKHVPIPNEVPQEVSVDTILTWPQDLFIPADAPRTGRELQVFHIANAFLQNAAVNSADCDISMEIS
Ga0207647_100197458F004830GAGMRMGNHAVMLRVAPFLRIECRFWLTNDGWNGSCEQPSISVQAGSFEHAKSEMEIALGKYIESLLQQSHHTTTGQAA
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