NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207647_10318972

Scaffold Ga0207647_10318972


Overview

Basic Information
Taxon OID3300025904 Open in IMG/M
Scaffold IDGa0207647_10318972 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)883
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameKellogg Biological Station, Michigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012683Metagenome278Y
F013213Metagenome / Metatranscriptome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0207647_103189721F012683N/ADLEDSLRRALVLIGDVSRVALLIDISLPALQARVRAGDRIQPAWGRFVERLSGYGLPDFPHVRPLRTPGPLATLVVAYRS
Ga0207647_103189722F013213N/AMTMKSWVLHRVSGLGGVAGRGDLPPRERGHEPDLDTDQMARDHGGATSDALRPGADLGVYAPLITAVRDELEHFVVSHVRLHVTIADRDRFLLTSVGVRSPGGAQARELLQQFMHEFKPEQVKRYLAREVIGRLPNAGVIDLTLFGGLSDLEGGERASDDGEYRELLAALRTTPQVARPYEVSVLGRWSEADAPAAPFANARGGAAPST
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