Scaffold Ga0207699_10005465

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207699_10005465

Scaffold Ga0207699_10005465

Overview

Basic Information
Taxon OID	3300025906 Open in IMG/M
Scaffold ID	Ga0207699_10005465 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6084
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008041	Metagenome / Metatranscriptome	340	Y
F051344	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207699_100054651	F051344	AGGGGG	MSLWRIRIAMSDDPRSQELLTEALAGQRVCSRLMSPRDTQMTVDVVIEPADVDGLGALLGELHMISPQVFVSSADQPPSLATA
Ga0207699_100054656	F008041	AGG	MRDGLFQAEEFGTASPTTVTIIFICPYSAPIQKVRFAIRRFLREGYHVLAYETTEVVFTEADPMLLPELISQVREDIRSRIAKLTSEGVTGFGFFGSSLGSFILYNCVGREIPELRWGVFNTGGNIARGMWNMPTLRQLHEARGWSLPRLEEAWAELQWPDFGRLDGCRFVFASSRRDDIAPLRDIARYLEPMLRAGAEVSVREVPAISHRTAVIAGLWRGPQLVRTVRPAWLT

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