NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207699_10012446

Scaffold Ga0207699_10012446


Overview

Basic Information
Taxon OID3300025906 Open in IMG/M
Scaffold IDGa0207699_10012446 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4329
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007331Metagenome / Metatranscriptome353Y
F028635Metagenome / Metatranscriptome191Y
F072032Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0207699_100124461F007331GGAGGMSTVKEVIAAEKRVQEVLDALKNAGAKDPNNHAFELRNATDEYTRAVRDLNSK
Ga0207699_100124465F072032N/AMDSEKELLDAFERVIHEDFPNPQRIDCPGRDVLLKLAQRPADTQLARSLAHIRQCAPCFDELKELRQKRQIQSP
Ga0207699_100124466F028635AGGMAHAGRALVWWDRDVDQAGRPIRPDVRLAAHEIWKQACQRTQSLLDDHGPAAELMENSVAQVSRYLNRIGAPESSSKHGLLMVAFCRGLRRYAAKLSRLELVGGAGELASRALDEAWAGQMNVRLELAGVLRKLRENNAAVLMLRAAGYEWEDVGQILGKSPAAVRIRFWREINRIRRSSGYR
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