NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207699_10171005

Scaffold Ga0207699_10171005


Overview

Basic Information
Taxon OID3300025906 Open in IMG/M
Scaffold IDGa0207699_10171005 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1454
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001596Metagenome / Metatranscriptome666Y
F006278Metagenome / Metatranscriptome377Y
F036885Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0207699_101710051F036885GGAGMTDKKDRERVIAEITLSHLMRLGNEQGCPVSRERALAFLNQEGRAFEMWKHMMQAAEEFIAGSLFKHSFSPTGHNGFASRPRPVRSVGNAAL
Ga0207699_101710052F001596AGGAGMSWFHSSTAPVDARNYASPAEVVACFQDQGNVLGRLAFLITGDHATADQAVVQACEITLQGNSPFRDWLFEWAKAATIASAISHGAKAIRICEATYKDRRCPHLKHLSQGDAEERAATLDLILGADTKKLLTELDTLCRAVLILRVAIRSSIQDCALRLNVSRAAVLGANCHAMAWLLHGHARPVEEDHNTSHAV
Ga0207699_101710053F006278N/ATLKLEGQLVADWAEQVRCLVTKDELPKGLTVDLTEVSYVDSVGEQLLKWLASVGAVFVAGSVYAFAVCDRLRLPLVQRIAERRKRRPGSSGERSSIKHPHPVEAI
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