NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207645_10071301

Scaffold Ga0207645_10071301


Overview

Basic Information
Taxon OID3300025907 Open in IMG/M
Scaffold IDGa0207645_10071301 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021157Metagenome / Metatranscriptome220N
F036743Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0207645_100713013F021157GAGGMSQHRLFYFMELKEPKAACGLFPSLSWCCYRVEWRPGQKFHDAYRDVGDGVIEVWQDRFVLAVDPGGVEYDAGQTDALMAARFKKRSAETAQDTSRAAISSLSGLICGFPS
Ga0207645_100713014F036743N/ALTLSAGFGLTGCAAIDDLKVSIFQWLDPVNFTGEGEELLGYAPETRLIPPAEIPKQAAKAPSKRIKPATRKLQRPQTVVLPPKKPPISDSPETATPGETEGQSAWPHSMRSRTPNPEAPPSFDGRFCAECWGLPAKAE
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