NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207645_10127992

Scaffold Ga0207645_10127992


Overview

Basic Information
Taxon OID3300025907 Open in IMG/M
Scaffold IDGa0207645_10127992 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1652
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004245Metagenome447Y
F033545Metagenome177N

Sequences

Protein IDFamilyRBSSequence
Ga0207645_101279921F033545N/AGGRGRDLLVTLFDQLIENSGAGAETGFDLGEGMVPIGLADDKIGRALQQRQERNQEKEEPATETAESKFQR
Ga0207645_101279923F004245N/ASTVHAEWGFEAETGFVYDSNLSNSDRSADVRDDWGWRSDVSVNNGLQLTRDLRLNLGADVRGDVWDRFDAFNTVGVGASAGLRYRFGLGRQAPWILLEDRFGYDRFHDTPQSGNDNVVNLRGGVALTDRIALEGGYAFESFVAPNDFYDRQLHRADARMVFDVTSSLQLALGYSYQEGDVISYAVPPRPDIARFSVEREDQDEFGQPLRTAYKLLGRTHALSFSAAYQLTKRASVQLGYEYAITTHDPLEYENHLVEVKIAVAY
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