NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207705_10001376

Scaffold Ga0207705_10001376


Overview

Basic Information
Taxon OID3300025909 Open in IMG/M
Scaffold IDGa0207705_10001376 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19428
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002023Metagenome / Metatranscriptome603Y
F005075Metagenome / Metatranscriptome413Y
F094086Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0207705_1000137610F094086GGAMTNDQIRGEHDRLQVVLEAYEARAVADSIPDHHAGLRQRIAALALKLTEKDVA
Ga0207705_1000137611F005075GAGGVLGVLAAVLLLGSVIAWVKLVRGPLLQRTDGSTGTDSAQGELASELLFWAAGLSTAAVFLAIAGWIFI
Ga0207705_100013769F002023GGAGMTQSVLLVAVTAFLTWIIMRSVRSRTADPKRLSAQESEAERAKEVGSQLDGARDRASVVEVERNKLALAKAVKAALWVTDARLNAAVPELLKMAQLWAGKSSVRGKKWTAPKGVTDIEGLDNSAAAWASWRFDGHHWRIEGQWQPSTLPEEIEGDVGTFKVLVDRQLVLDMTISTEDPQLLWVDALTVGPWVSELLAFAGARTSDAKARSSARSARKNQNRADNIHWS
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