NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10007219

Scaffold Ga0207684_10007219


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10007219 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10041
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002638Metagenome / Metatranscriptome541Y
F011042Metagenome / Metatranscriptome296Y
F019403Metagenome230Y
F059826Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_1000721919F059826AGGGGGMRRLLVAMAALLLSVVIGGAQEKSPVAQAMVQGAPEKIKKAALAMFVPQGYSIDSDIASQLKISRPWSSEETSSYNTDHWTLQPVSNCRDVHTLILLPGDHAISVTMHWDTVCHVDAGWKIWNSDNEKDIKLMRATLADLKAKIEKADQRH
Ga0207684_1000721920F019403GGAGMSISFESEEIVLKKLRERLRRVTDEELIKFGKDVRRLAENPFTRQLAEARAEWKRRNQLRDSKNK
Ga0207684_1000721921F011042AGGAGGVQETIIFSGTIIGEGQRVECEVRATKTTLDGDPPVFSGYRIMESDLTDRLPDGNYELLVNRERTRFSRDAGRFLSLP
Ga0207684_1000721922F002638AGAAGGMSMKDVVLKYPTWQVPYRAAVIETNPTLLKQKIAGAQQAAILRLKQLEHSADHHHELTALTDALTALKILGETIWAE

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