NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10018628

Scaffold Ga0207684_10018628


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10018628 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5945
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001795Metagenome / Metatranscriptome633Y
F023313Metagenome / Metatranscriptome210Y
F029374Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100186282F001795N/AMRAATFIAITLLISCRPQNAAVTDRTSDTTGFTEMTPRDSADTSLSTPRVITGPTVVVFWLAGADTLSADDQAEALDELNYTTEGIMPTLQRHHITLVPTNSDTIYVALPNRQRRMILLTGVDYPFGYVLVQPGTAERILAGVYSDDELLDEVEAYFDLPPASDSTAKYPRIST
Ga0207684_100186287F023313GAGMSAERIYRLLLRAYPAAFRAEYGREMVLLFRDQCRESDVRTLGFWVRVFWDVVRSAPALRAEATRTIEVIMKLAAVLTLLVGVFGVVNAVVEWVAWGTGTIAGRHGLALVLGICASALLLAGGAAILRPTQRGLHAARYALLASLVLIVATRLLHPWMSVFSQLVGMGLPVAFLIALYWPRKPSTFGAA
Ga0207684_100186289F029374GGAMHLILEVMDRVPSLRVLWGGAAVLGLIGYAAARFKRWLVLPALALIAIVAWTQLGDLLDPHVSSAIMQDAGLWYVGQAGAAVALAVILCVAGLAPKRAA

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