NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10083447

Scaffold Ga0207684_10083447


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10083447 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2721
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000334Metagenome / Metatranscriptome1279Y
F027951Metagenome / Metatranscriptome193Y
F055971Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_100834471F055971N/AAWSEGGYHGFTVEGGTWGAISSAGEVLTGGTPDALNLAISAHWQAMRG
Ga0207684_100834472F027951AGGMSQGRDRPDLRVVDGREDPVLRRQRFEQAHPEAVILPPSAGRWRAIVPPGLIPGDGTRTTLGAWNLGDLMDQLDAIYTDSGRDTTG
Ga0207684_100834473F000334N/AMADRAEWQAATRRQRQLAVAADAELRRRHPSRYFGPLRSAEPGPATGAQRTELTMTAGEETPEIGQWIRDLAAGRRTFADRLADRQSVKIPSEDPDYGDLGQAFPAWSGSPREAILQPPRPEMTPSPRILQRAMDRDAGWEAAD

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