NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207684_10231293

Scaffold Ga0207684_10231293


Overview

Basic Information
Taxon OID3300025910 Open in IMG/M
Scaffold IDGa0207684_10231293 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1595
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000037Metagenome / Metatranscriptome4230Y
F006088Metagenome / Metatranscriptome382Y
F017522Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0207684_102312932F006088AGGAMSSERDACLRKADDAKQRAAQATEPFMKRAYEKVAEHWTLLARLESLIGNEKINEDA
Ga0207684_102312933F000037AGGGGGMESDYLILRRALAFRPSGEWNDDDYDVLCNGVVVGRIMQAAAVPVGMSWMWTLAFGHHEDRAKTHGYAATREAAMAAFAKSWRHE
Ga0207684_102312934F017522GGAGGMPSHAERERTQQRRALRLLADAPEGMTEALMVAHGFNSELLVDLCIAGLAIAKVERMIAGGRTVEVVRLKITEAGRQALTASRGKST
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