Scaffold Ga0207654_10019007

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207654_10019007

Scaffold Ga0207654_10019007

Overview

Basic Information
Taxon OID	3300025911 Open in IMG/M
Scaffold ID	Ga0207654_10019007 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3616
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus → Mycobacteroides abscessus subsp. abscessus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001643	Metagenome / Metatranscriptome	659	Y
F020070	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207654_100190071	F020070	N/A	DSGTAEEPTKSWTATTDLKSDDLTPQRIPVRIIESHSQNGNRMLDKRSVEIRGTDGRVEPYQDIEKETLQVDATMVRATTRTFGKDANGRKALVQVTEEEKHTLPGDDSNVVRVTYNPDVNGRLQPIQREIVETKKIGKDLEETNTTVMLPNVNGGLAPVFKTQEIRKRAANDTVETEKTTWLSDVNGNWQVNEVSHATTRQEGTNRTTEERVSRLDFEGKLGEVSRVVSQESESTSGEKRNVVEAYSIDVPGTTRDGRLHVVERKTTTESSSSTGERAREQKVEQTNPGDPHSGLRVTVLVDGRMVPGPSGEQSTVTIRARDSNGKLGIVSVDTTKSDQIPTIRIQQAPAERP
Ga0207654_100190072	F001643	AGGAG	MLEELMNIPTDTLIDMLYIILAGDFAITANDAAEIEQIQRELQRRGGAQRWSFQTVN

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