NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207654_10082609

Scaffold Ga0207654_10082609


Overview

Basic Information
Taxon OID3300025911 Open in IMG/M
Scaffold IDGa0207654_10082609 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1938
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003450Metagenome486Y
F016445Metagenome247Y
F058370Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0207654_100826091F003450AGGAGMEPANPTFTTEQQPRFIPWEEQLQDHTRKLEEYLQNLLFRGCTLETTIRSSRAVLNHLFDRLQIKDPTHPRGIRQLLVWELLDPGLGSSRLGLLISLLLQDDLAHGTRRKYIRELRSLC
Ga0207654_100826092F016445N/AMSLMTKKTRIDARRVAEIIGCSRKTVLNGGAGTAELTRIRNGSTQVRFILEEVLAFAEKQERDAQRRLRKGHSTMTS
Ga0207654_100826093F058370GAGMKRIGKQFGSTSAVRREETVVKNFHQYVGPGGQTLHGYMRRYKNVRLRKKGFTSKAEAERHLRQAMNDIDAEERGEIRCKPTTAQEALNIYRRNQEVRARDKGYQYAHNVRSNCKIIQQFVDHFGPNRLIRECTETDLREFYQILCFRPTLNKNSAGVFISRIQGMLKAAQKAKPDLINWLRPTLKVNRTPE
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