NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207654_10361043

Scaffold Ga0207654_10361043


Overview

Basic Information
Taxon OID3300025911 Open in IMG/M
Scaffold IDGa0207654_10361043 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1002
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002523Metagenome / Metatranscriptome552Y
F064118Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207654_103610431F064118N/AMSDKEGISRRLSQIREELVHLFFEQTEFYRDGARTKHTETELAECEKRRERIRGLFAELDELRKAE
Ga0207654_103610432F002523GAGMLVIVSVSRLDNDRIEIEVARPQHDSNPSQSYAFEKELRAVLSDFGISEELIASHLKLLAQMGTGEQLKFPPMDVPKHELRSKGFRL

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