NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207707_10000017

Scaffold Ga0207707_10000017


Overview

Basic Information
Taxon OID3300025912 Open in IMG/M
Scaffold IDGa0207707_10000017 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)237068
Total Scaffold Genes198 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)146 (73.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002416Metagenome561Y
F013685Metagenome269Y
F019549Metagenome229Y
F032806Metagenome179Y
F037748Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0207707_10000017101F037748AGAAGMSPDADLLPRMGLYRVVIYEGQRFVRTDNENVIISVAEKRAEELNYQFGHRKKKEVGK
Ga0207707_10000017111F013685AGGAMKKLVKCLLIGVLIGDFLLPTPVQAQWTVFDPAQYSLQIERQIEEANRWLERVKQYSEEINKLAQQLSTMKGILGETEKLVLHNANLTRTMAQLGQTVRDVFALKRAMETMVISRLSMIRSMKTRLMTGVFDPEADLRDFEEYLRNSIGRTSQNKIATMNRIAMFDATLARLYHDLQTEQARQAGAALQMKQAKDKLDTELAKPSAEQCASCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKLYNLTMEERVRIANRVRATDEAWNSLNIVKDDIFQAIENGGMPSPPRLPQ
Ga0207707_10000017113F032806GGAGGMRPRPVRPNIYLPVVRFGVADSDWFSILLISCICYLAPVPFGITLLYVPLQMWTWLFATAAAIAFFNYIRIGRKSYWLQHQLRALFVSHRQHRFIPNSKRRNFRRPWIRDQPDLVHLAKDGAVSVNSVLFEHNNRILEAHEERWITDWGTTN
Ga0207707_10000017114F002416AGGAGMNHLIETINSSALPNSRAARFGRRLIGFGLALKTLNGLVALVLAMTFGAVSVTAQTPSGQFFNGSSDQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGICAAVYAFSQGETVPIDNQF
Ga0207707_10000017134F019549AGGAVPVNEDATQDSVLVPDNLPEFSPVDDSGMLSGDRLLVLEAMHSLVSLDSELREARAQWNQDWFRRLMRIRPKAVARLRRRWGKLDPPSATPLGTLTRRYHANLARYLYQSR
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