Scaffold Ga0207707_10000035

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0207707_10000035

Scaffold Ga0207707_10000035

Overview

Basic Information
Taxon OID	3300025912 Open in IMG/M
Scaffold ID	Ga0207707_10000035 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	147299
Total Scaffold Genes	144 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	112 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013397	Metagenome / Metatranscriptome	271	Y
F099622	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207707_10000035133	F013397	GGAG	MTPAAATLAIRTRLTGHRLPYGSLWRCLGEYGSGASCDGCGERITSAQASYAVDFTPGVLPESARFHRVCFEIWQRECQVTALP
Ga0207707_10000035134	F099622	GGAGG	MSVTKISSVRAKVADARALSRLLYEVPDADEIREQLCKPFFARRWQQSMQRSFWITSDGNTAVCLTLTGLDVDEMVAIWVAFDAYRARPGFTLSASSLGEIIEAELELVAELEN

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.