NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207695_10030491

Scaffold Ga0207695_10030491


Overview

Basic Information
Taxon OID3300025913 Open in IMG/M
Scaffold IDGa0207695_10030491 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5935
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002548Metagenome / Metatranscriptome549Y
F022212Metagenome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0207695_100304914F002548N/AMPKHEMESTEEIRSAFFERRRLRRIRMIVELTHNLISSDRTVTSREARCLVSCARKAILDLHPGFESRYDRIVRPHFERVLAERWPQEQTLDLDTCGDEIVN
Ga0207695_100304917F022212AGGTGGMSRIVPAAVAILLLASCSNDANSALDHDWLAVLHHKKAAVSPQASPRQKQVYADTLGAFVQQHPQHSRARAVYQRIQLDFARELASIGRYQDSIRFYRAVLTHDPSNAEAAHGVADAVDHLAVTRAKLLALEKGMSQHQVAQLLGKPIPGWTSTHEHAEVTNESWYYRTSEGGIAGVYFRDGVLVAAEATAHEKVAPLTR
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