Scaffold Ga0207671_10139874

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207671_10139874

Scaffold Ga0207671_10139874

Overview

Basic Information
Taxon OID	3300025914 Open in IMG/M
Scaffold ID	Ga0207671_10139874 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1864
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F090863	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207671_101398742	F090863	AGCAG	MDDTTMQLGLLMEAAQTHQKSAESSLRKLKAATNDLAAIVRDEVRIVIVNELQSLEADSKRASHALREVQRAATLRVLIWSVGITTLCSAIPLFLTCWLIPSHGEIAVLRARHDELTTRIASLEERGGRIDLRRCGAGARLCVRVDRKAPSYGEQSDYLVVRGY

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