NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207693_10231545

Scaffold Ga0207693_10231545


Overview

Basic Information
Taxon OID3300025915 Open in IMG/M
Scaffold IDGa0207693_10231545 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1451
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034683Metagenome / Metatranscriptome174Y
F076292Metagenome / Metatranscriptome118Y
F103763Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0207693_102315451F076292N/ALDDDLLDIPGYRPRQGWKPAAGTGVAPDVRSAARRRRRDRR
Ga0207693_102315452F034683N/AMTGDHRVTPGLIHDILDALERHGYYRGDDQHADRAIGLIGDLAGIYEGTQDHPASAFMVPPPAPADPGPSRAGAVTLTRADAITVFAAAGIAADDKRYRVEMCPDCADQTCPDCRTHLRDIEAFDQMAGRMLQAAPAAGPGRPGPDRWSQPAADREAGQ
Ga0207693_102315453F103763N/AVTPSRRKPARPASRTDATSLVPSPRSGERDVPETADPYDLPFPDHWPPGRREYVIVVDQLRGWRPDLPPSLAELLEAGPARTREPEPDLEAEP
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