Scaffold Ga0207693_10307322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207693_10307322

Scaffold Ga0207693_10307322

Overview

Basic Information
Taxon OID	3300025915 Open in IMG/M
Scaffold ID	Ga0207693_10307322 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1242
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.4774	Long. (^o)	-85.451	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011014	Metagenome / Metatranscriptome	296	Y
F060201	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207693_103073221	F060201	N/A	GEHADRLAALLELAPRTRLDAAVLSSWIAGVEAATRRAGLAWTPPGLSLADLQLDFPVGEEALAAIFANLLRNAEAAVAEHPEPRVVVRLDREQDVTGRPLVTLFVGDSAASAPTLEAIEARESGRGLAIVRDLVRQWRGHLVVHAEAAPFSKQVGACFPI
Ga0207693_103073222	F011014	AGCAGG	MLSDLTAARPRFVVCEDGTEYLERFQRFLGDAFTFSPASDFETALYAAAGAEGVLLDLDFRRTPPERLVDERGAAPPDLDAGSRRRLTETQGILILRQLRARGVRLPALLFADLDDGEQARFLERTLAPLTIAPYRLGIVEVAALMRAAIATTPALSRR

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