NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207663_10236383

Scaffold Ga0207663_10236383


Overview

Basic Information
Taxon OID3300025916 Open in IMG/M
Scaffold IDGa0207663_10236383 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1338
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052754Metagenome142Y
F055137Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0207663_102363831F055137N/ASASVPADPGTAPGLFMGSMGLPPASAVTGGLALPPEVAQYGSICTTMIDWVAQASFNPLLSLNQDLGPITALAFNSQTDSKANLAIADDPALIIPDQSLQKSQLVPPSTGLHGQGHVYIV
Ga0207663_102363832F052754GAGGMRFILLVVTCFCGLLSFAKDTPKAMLVSHNDIKGPIIGNAHIEDLEIFADGHVRYSESGNDRKTGTFNTRLTPAQLRRLTVLLNSKEMRAVPAEIPSQIRVVDFDWEAQLNIQHASGRQTIAIKNFYPMLNTQRPAYPRALIELECILRDLQARATKRPVHTEDEDWCPEKAEKSR
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