NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207663_10437358

Scaffold Ga0207663_10437358


Overview

Basic Information
Taxon OID3300025916 Open in IMG/M
Scaffold IDGa0207663_10437358 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1007
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016509Metagenome / Metatranscriptome246Y
F019526Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0207663_104373581F016509N/ADPNLRFGEGLTFEVNYARRLMGTDAWALALEVPFVVNPDEDAHTYTQAFLSYRSYFVTPAARLNFFPATAVSPWLSFGGGFGHFGGISDGSTSKSGNATGVMQAGVGLDVKLTGRFSLRGEARDFWSGVPDLNVNTGKSRQHNIFVGGGIVWHF
Ga0207663_104373582F019526N/AVSTVWTEFEVRDVDGKVQIAARKGDLTISDNTGTTTLAQGQETTRDESQSQDDSQTHKGKKKKKGAGPAAAAAPGAAGGVLNSPVAIGIAGGIVLGGTAWALSHSDDPVSPAKPNP
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