NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207660_10005187

Scaffold Ga0207660_10005187


Overview

Basic Information
Taxon OID3300025917 Open in IMG/M
Scaffold IDGa0207660_10005187 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8471
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029374Metagenome188Y
F032974Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0207660_100051871F032974N/AIRSFRFAWVEEQCHQRGWVPNPRYPEREWLAIPGLLVDRSYSVTKTLAVDATMMRYGFELDRSEEPDGIDVVSPHGDNRGLGVRRHYSYLSVFDGRRGETRVSPLLGSPPAAIRRLDAPVDAQNLDTRAILLAFRPLDSTMGHLLIDRAVTNERRAFYRGRSTFLLEERHDPSGWKTMLWIEPERGFLVSRYAVFFEQHWIVDVDIDYTQDARWGWIPSGWRITEMLADGSRRLVSAATVSSYSINQPISIQEFK
Ga0207660_100051875F029374GGAGMILQPSLRTIWGAAVVLGGAGYFLARVRRWLVLPVLALIAVAVWPVFRELLDPHVGPSILREAGLWYVGQICAAVALAVILCVAGLAPKRAA
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