NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207660_10568113

Scaffold Ga0207660_10568113


Overview

Basic Information
Taxon OID3300025917 Open in IMG/M
Scaffold IDGa0207660_10568113 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)923
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001118Metagenome / Metatranscriptome773Y
F007481Metagenome / Metatranscriptome350Y
F028897Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0207660_105681131F007481GAGMRELPNADRRLAEYIRRALNKIKKPSTAEEITELLNRDLGPGDRAFQVRDIAAWLRNADDSVLHLYWL
Ga0207660_105681132F001118AGGMQCMAVTIELQNLGDVQLSRDITAHIEHAFAGRGGDWRVSIAGSRASENWEMRVEGPNGFERSYTLAGSAGEHVPEVIRRLILQLMPAGSA
Ga0207660_105681133F028897N/ARPEKTDCFCEEQLGFGTVKAVIASRAATVHVSTQLALSQELADGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.