Scaffold Ga0207649

Basic Information
Taxon OID	3300025920 Open in IMG/M
Scaffold ID	Ga0207649_10019923 Open in IMG/M
Source Dataset Name	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025920 Open in IMG/M

Scaffold ID

Ga0207649_10019923 Open in IMG/M

Source Dataset Name

Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3840
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3840

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan, Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Michigan, Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F041481	Metagenome	160	N
F077482	Metagenome	117	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207649_100199232	F077482	N/A	MPKWMNWLPHQWHASTLVLPIVILAYPSLRCGEAYELLLDRELSALDQFYAGWGTVIRMDENSEGQGPKDTMQDNEYRPAGGIKKFAEPTIQLRGTAEKIGLDRQSLSSFIGTKFLNEFAFLQSDFVFEKTYQTWEIGIFECETWTVGVNYPIAFHVQCAGGSMDEPREWHYASLGYGPADKTSETVRGTLDAIIQEYATFVRKASGKD
Ga0207649_100199233	F041481	GGA	MMMCGPFRHVSASEREHCLDPVPPAISSQDLSYCLKVQRQTIMRCRVSFLVVFSITLLSLAKPAFPATAPSTYSGYTGTDPKPIPSPPPVLGPMNSILTDPTFGSRILRVTDSKTAGGASLISEDAGYFRTWNADSTAIKLMTTTGKSWWVEFDPVNFKVGDGSSRPTLHQLNFNYKWEWSAVDPDVLYFLNGNQLSKYSKSAEVVTHLGGPPSGEPVTYHVAVVGQDSWVCSAAGAGAQGTYTKLFCLNPNSPSQSKFIDIANRTINGISQVDSNWPTGQKIGIHSIFGSAGGTWLGVIFHGQSWGKGVAVLNLATNSWSLATGVLHQSGHPCLGHGRYVNGSGSTNGKDSRGAILRDPDHLMDSSRQKFLMQPELTIGWHDAEHSSWFNASTNPDAPILFSRYNITKPPSPLPWYGEIIMAATDGSNTVWRFAHNHNGGGSFYGQSFAQISNDGRWALFSSYWDGTLGASTNSDSGMSTRLDTFIVELVPAERSLNERVK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207649_10019923

Overview

Ecosystem & Geography

Associated Families

Sequences