NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207649_11651916

Scaffold Ga0207649_11651916


Overview

Basic Information
Taxon OID3300025920 Open in IMG/M
Scaffold IDGa0207649_11651916 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)507
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027254Metagenome195N
F103523Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0207649_116519161F027254N/ARPNLKGMGHSMDNEKRKAERHFNDQAIQEAVKRMTPELEAASEAAHKMKDSDDSGDDQDYRDFDRIVELGYLVEAVNGLCGPHLRLLTDIADALYAIDEGQKTTHKVGSKH
Ga0207649_116519162F103523N/AETLGDETFTLAVGFALVLLGVIAIAAYAVVRAIEWASRA

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