NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10000003

Scaffold Ga0207646_10000003


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10000003 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)537256
Total Scaffold Genes589 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)432 (73.34%)
Novel Protein Genes42 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)32 (76.19%)
Associated Families38

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F000611Metagenome / Metatranscriptome987Y
F002367Metagenome / Metatranscriptome566Y
F002498Metagenome / Metatranscriptome553Y
F002993Metagenome / Metatranscriptome514N
F005345Metagenome / Metatranscriptome403N
F005875Metagenome / Metatranscriptome387Y
F006078Metagenome382Y
F006340Metagenome / Metatranscriptome375Y
F006583Metagenome / Metatranscriptome369N
F007853Metagenome343Y
F008485Metagenome332Y
F008873Metagenome / Metatranscriptome326Y
F009059Metagenome / Metatranscriptome323Y
F009132Metagenome / Metatranscriptome322N
F009674Metagenome / Metatranscriptome314Y
F012005Metagenome / Metatranscriptome284N
F014244Metagenome / Metatranscriptome264N
F016129Metagenome / Metatranscriptome249N
F016790Metagenome244Y
F018334Metagenome / Metatranscriptome235Y
F021281Metagenome219Y
F021953Metagenome / Metatranscriptome216N
F022626Metagenome / Metatranscriptome213N
F025705Metagenome200Y
F027476Metagenome / Metatranscriptome194N
F028125Metagenome192N
F028751Metagenome / Metatranscriptome190Y
F029079Metagenome / Metatranscriptome189N
F031428Metagenome182N
F032621Metagenome179N
F033736Metagenome176N
F036188Metagenome / Metatranscriptome170Y
F036634Metagenome169N
F071054Metagenome / Metatranscriptome122N
F085526Metagenome / Metatranscriptome111N
F089795Metagenome108Y
F104542Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0207646_1000000310F018334GGAGVTLHEPEARVQVAELKVPVELVVKVTVPVGVIAPAPEESATVAVQVDATLSRTLAGEQETVVVLVRIVDASVKLPLLPVWTESPPYVPVMRA
Ga0207646_10000003105F005875AGGALSRSVMIIGLVGGSLFLLAGFLELLPWPVSGSIGGVLLGGWFGGEIKKRLDKVNEKGKETKVIRFRKKALLEDNVSEMRSAGWEPRWESYHETQTGLLVRRIEYSVVMERTRRKLELSGLKRLSKFLFPSK
Ga0207646_10000003118F028751AGGLHARQSVTLWSNMTRKRVLVTLSVPERRNKAAQALIIAGLVFLIAIPVGATAALTTSRGQNGSKLVPNCLALRPSQASVIAGGSGLILFSCGGGPALTVGKSDHFRPSFALPTGYTDLRIVSHGPGVTDCSNSPILVSGQLFDLTGPGGFDYCAGYANAPNTGLASFKVVWSK
Ga0207646_10000003121F002993AGGMAYGLAEGFRKTAVRLGGKKKSQAVVIATFGNHFTLNDALEIFRKEGLTFETEKGHIVKIFLDKNTKERAEQVRSIIRENFGYVEPL
Ga0207646_10000003125F014244AGGVAFGEQTYTLLSEEARARGITIQELLRAVVIPDWFKAKYEPVPRQNPIIERRTREEEAVVHSFSNKLRY
Ga0207646_10000003126F006078GGAGMKALKTATLGAVSPLEPMVKVASQSVFYALHTRDGNCESRCGASQTRVAEIVFGVEIVEWDLCFGCLSQTGFLEYFNSLPFATPREAEEVKILLGISNEAFGTQNRAAPI
Ga0207646_1000000313F018334GAGGVQVAELNVPVLLVVKVTVPVGVTAPVPEASATVAVHVLGVLSRTLAAEHATVVEEARMVEASMKLPWLPLWLESPP
Ga0207646_10000003148F029079GAGMPQRSEELTQSSLAEILGKMSEKGYALNFDVTLELATPTLKVGTMRVHGKLESAALKKR
Ga0207646_10000003149F006340GAGMSQPWTGGGNLRAVRGATASRYVALVAVLTALFTAYGYVSSVELRSLTRSLDLFFLLPAFFAILVSLTGKKWGGTVLATIIGLIFLPTPSAGSNFSPHIAASVIVNGLVFDLYLQHSGNSLLDPSRKHLVLAGTLGNLAMAPTGLLVLQAVGIASPAVIWAIALIGDTLVGAAGAFFGTIVVERVKGLQARRVLEAKSDIRVRI
Ga0207646_10000003151F007853AGGALSSRSPVEQKLLESKLEKALDEAWSKVNIALDNAPKPSASFAMEVWLAAEALEYSSFLFNLAYGLEDLKPAVKARKHEATLVLIKDSIDLLKRTREGRHKSATDAYVNLRTAADYLKTAHLDQIKKSTKKKDSV
Ga0207646_1000000317F002367N/AMSAWPTTVGVKVTLHAPEARVHVAELKVPVEFVVNVTLPVGVTAPVPDASATVAVQVLGVLSRTLAGEHATVVEDARIVEASVKVPLLPVWTESPP
Ga0207646_10000003183F016129GAGLGVEDEAQPKKSGSRRYIETLLGWHGEESAGGNLYQTTLLTSIIEYGIILFFGIWIVSEYFANIYEQQYFGSFDPVFLVIVLMIASAYGFTRLISTLRTVLKPAKKTSRSEDDY
Ga0207646_10000003186F032621N/ALTSSTGSNIAVQTAKEVHIGRLPPASLVYWLRLGFGVLAGVIYNLAGFGSLGVGLGTLSMITVGIGVYSVSIFLVKNLLGYGPEILKGPNKHVTIGMGSYVIWMIFTTILLYTVLNPHPS
Ga0207646_10000003191F009132N/ALVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVVFVGSLIVAWWRVGIAVLRIRVDDSQNPITVKLVSTSKAEAVFKALKG
Ga0207646_10000003193F031428GAGGMNAARLGESDLAKILRGVAVVLAAALMILPAYINYEGWKFGFSPVVMMAISLQAFAIGIVVFILAVGKDRLAPKSQPQ
Ga0207646_10000003203F036634GGAMIRVDKKDPLSAIRAELNSLALHVAKSGYNAEVKGKLREIAVRMQKLAE
Ga0207646_10000003227F005345AGGMGLRFTLQNEEGVLLDLPLSESDWKPRVKELVMKELGESEADIDSLCEICDFFSNKRRVQMLNHLVKDCNNSASFTDLLKVAVNPKYISDLVSKSSRRELIVKGSKGYSLSPLGLGSFLLLSLATRRLLRETNSIIGDDKSFEGQ
Ga0207646_10000003289F012005GAGMKFGLVVGGALLLITGLLAYSMIPNFHMVPLQSAQTIVNLKPIAVSSASLSETPQNVTLFPGKENDLLVNLTVSTQMGSPSSVQFKLFPEGAFQSCMLSSQPRGCLVNQAVSNASLRIPLNASTTYYFGFDNSGSSSPKQVMLSASLVGSSVNTIVARDGGFNFAGLGMSLIGLLVALYGVFAKTVIPWE
Ga0207646_10000003294F085526GGAMVDFHYFIFIINADAAVFGVIVFLMSYIALRLVYRMWRRSLRCPHCGEVYAAKHIVHIPEKTMPNTLWT
Ga0207646_10000003318F006583GAGMVNCSGCSGIIHRDEPVSAAFSQEGKRSYFHKGCEEKAEYLSRWREEAAWAFRPVRLIVSDWEACSPKKHLGVWQSIFIARRDEDIWCPDCGLKIARHEGLTCTACGSHAIVVGVESTKMVFTHRQPLFKLLLHCTEKGEDSTSYAISSGFTPVAITSRRKGESTDSQATVMMLEYEPKENLKKGLKV
Ga0207646_10000003340F022626GAGLKVQKPNWFSAIEVRDLVQRRPWSILSWGAGIIALAFIGYYGILSIGNPPADVGAQFVNAEFPPPSISPWFYGKPITWFIYAAFLYWSAGLEAQRIHFLNFSDRTRRFLFIVTALVAFGAFYEIFYNFMIWSALEVLTQSCSPSPCSPDVISSRWPSLPKPLNLVFVTKVVVLVFSLSVYSLWYLYRVDKEIERRGLTRPVASSRQDLYDSETMRTSPMTRAYSSVATTNIQDPPEAPQP
Ga0207646_10000003352F002498AGGAVKASERFHSPSRGIESLSKEEHGLFFDAMHRLGLSNEVKQAAVALYLDFKRRPIGEYNSDHKNLDIFLIASISLAAKVIGDLRTDQEFETRMFVSREKLVDAEERIIKSFGVGDSIIPLPKIVFQLTRRQIEIMAESFSERQLVTSAEKEELVKRSYEYLDEMVARGTAPKMSYRGRAAGVMLNAARDLNLQISEMDLAKAAGFDKKSVAINANFIAALLKDEKNSTEATEILGK
Ga0207646_10000003371F028125AGGMRSRASLARMPVFLLIGIILSSTPLVSNMPPSFQFSAAASLMNPPTLNTAAINASMRQVLSWAESRVLPNGTATLQGTSNNLWATSLVGRTMTYLQLEIGNTTTQTIIQNMTKAEHILLQNPSFISYGIWSPVNLNSEFQLHLDAQKFLSRSYGLTLDPTARSDMINVTQNMHLNLPSRSDYFDTVAWTLANAVWFAYYSGSTLPPTSDYTAAVQDLNTNYNQTGATSAARDPLIDFDKLLRFLKPITYTDSYFRLQGNSLSQTYQTLETGLAGQLVTRQGSDGNIVSAEPYKSYLVEDFARDLDSSVYLHNNLTYAYSAYRAETYLTNLYLQSNGNFSLPDNGEGLYPTGAYHMISIANDLRSCSSNAWYNILVSSSKLLNYTLTIQNPDGTFRFFLNTTNPGNALTTVNTVSGLVDSYLVIHDTSVLSPETPVNLASCQTISSPSPLQNLSWLYIVIPLALVIAVAVVYERRHRAKYRGLVEK
Ga0207646_10000003374F021281N/AVPFGPLTRKLFFEQASSGYQVLRAYRGNLIFGIVWSFTATVQAGLHSFNVGLALVAGFGGFVAGVVSARGTAERIEKNGGEYRASRKRTLIVVGLGLAFGALLFYLIFSAAISLNTLLEFYSLYVGIPALYFGIAAGFRMSEARNEKEIHWEGQTFYSLPKGLSLQEKYQYRAEQWYRLRTRNSGQQEAPSKV
Ga0207646_10000003379F089795GAGLAKPVVSKPTTPRPDGITFLGGIALLAGIVLLVAAITFTLPYPDGWDNGPGLFGVWIMLCFGYFGFGQFVPALLRPIGIPIIVILAILAMLYLAAGIGLLSGRRWAWTLSATLAFFGVASSILQAVTLSFYDFFGIPGLIVTLVILVYLASPLARNFFFKRPLSRPSVLLIADD
Ga0207646_10000003431F009059N/AMKHHHVPAIERALPMERIVAAFAERFDDPYLDPMAELSFEELTAAFPDMPKEELEEGLSHWTNHSGEKTLSTKTVETGGAETRVWFVHGLARHRIDPSSTSSGRVALG
Ga0207646_10000003442F104542N/ALPFLIFLVVVGIWTAAGVLLSPWSQDQIGSGGDTYYFFSYQIWYVALSALLLLSFVSLPVLSFYHQSKIVHDKKASVSMKIISVCWAFFGALSFFQIAAGGLFLPTSETIGLVADSFLFILIAFALREPTILGRIVTSGETVSQAVYSKVNTDTIVLYNTESDRRSLVETFVKDGLASGQDIVLQVTKGEVPFYRAVLKGSALTDSSLGEHSVTIQPLEGTVAPREINGSLPTSVPTERRELVDLDELDPDQCRDIISRISKPSNAPLAKRTGRIWALNVEGAHPRVLDLLQEANPTARVIDLAMQQDAFSSMINMEHEDILGNRLLLEYEPTSKYEEIAQKFAREFQANVESVAIFTSAGSPIFRKFRDQRNISLFSFSTKTSSPARLSDEQVLLPERDTSLLLDAVDKLLQALAKKRIGIVFDVFTDIILSQGFEKAYGVLSSVVEMTESDTVSILVLINYEALEPRVLGAIQGLFRSQLRFNLESLKVVKLQGTRQEDNYKEEPLAGVQNSAGGIRA
Ga0207646_10000003488F033736GAGGMRRWFTNQIVMGALVVLAVIVAGFAGYALGHSGGYAAGYSAGYTDGNPDYAKIQASVKSSEVNYFGYVQQVLSKLAVESQNRSVKSPSAGFDKLYSVFKAANDSSTMFGQNMTFCNPTAKGYFQATATNTGNANFTNLYQTICLYYTKLANDYTGPLTSFTLQNLSNDFTLLSIDLLKLDSVIQSFPQ
Ga0207646_10000003492F027476N/AMVGWGFAFGRGIVVLLWSIVWAIVAGIIGALIIGGSLTSLISNPTAVASNPTGVVTGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYNRSSYATASMGSQPTMVAPAMRKFCANCGNALPGGTAKCSNCGASL
Ga0207646_100000035F018334N/AVTPQLPLARVQVAELKVPVELVVKVTVPVGVMAPVPDESATVAVHVLGVLSRTLAGEHATVVVVVRRVEASVKLPLLPWWPASPP
Ga0207646_10000003502F009674GAGMLRLQWDDATIVFHLKSAKIRNARKILDSVLDEAKQEAIARLNV
Ga0207646_10000003510F036188GGTGGLLQDRQRSGGKISPGLLREARLRQRDGEWLSSAKSVVLRRYRGKYVAIRNKRVIAASTTMKGLYAKIDKLNPGMVLITKVEKPTLLVYVQLH
Ga0207646_10000003515F000186N/AMEQELAFNLENDRIHYLTQVEIPITTVDFYFPIEPRPLIVFVDGRVHLKTSQLTKDEELRGLLRKRGYRILELYYDGYSDKRRDELYEEIMYTLGKE
Ga0207646_10000003520F000611AGTAGMQTNMNFPTYVFATVNPGRATKVVDELKRNSQIDIIAPVSGRYDLVLRLKPNTPHNIYQTVKEIREISDVRTTDTHTGFDGMQPTRKLESQMALGVSVLTCEHNTSESIIKQLSNIPGFIEASTVPGQFDIVALWQAKTSEEIVKNSVERVTTLPGIFKSETLLAYAPFFKA
Ga0207646_10000003524F008873AGTAGMTERKKEDEKKPVKLAPFVEPQLFVAVEEANRRLKEIMKVTDPTTGLYRSIQRITEVSEMMLRRQDQLRKLYEPSESVRKYLERIRQLVEQLTRTKMDELPSMSRTLIPQLEGEVSGYVETFERALAEKEKEIEALKAELEALKSKTKNQHPV
Ga0207646_10000003531F025705AGGAMQSKKTVKEPKIDKEFRRIAEKNLRKDRELVEKLAKI
Ga0207646_10000003532F008485GAGGLGKLQTPKENAEATLLALKEFRRYLEGLEKDLSRTSKKYSNREVAQGVGFVAAGIHEALNYLEIVKKVIVKTERVVAKRNASTENATLPSGPS
Ga0207646_1000000362F016790AGTAGLINEKSSAGTASTSTRSSRNLITVALVLAAVTAALHLYIGILVYGIPLGIPLILIALVYLGGIGLIRMNIRRDLWLRIGIYWVIIVIALWAASAAVNAPNTNIPLAYVSKAIEFILLGVLLRLRTASRP
Ga0207646_100000037F018334GAGVTLQLPLARVHVAVLKVPVELLVKVTVPVGEIAPVPDESATVAVHVVDTPEFTELGLHATVVVDERIVDGSVNVPLLPVWTESPP
Ga0207646_1000000379F071054GGAMEASYLDQPFNFESIQETLVRNSQVFMGEKIRVIFDSIDKLATKVPQKDFVKSFTELASKLKDSGATLIVTVDLSELPKDLAGSLNDMADCVADLSKDTSDPNERELKIQRLNQKSAKIDAETFEIDAGKGLVFV
Ga0207646_1000000385F021953N/AMPLPKQGDTVKVTLLNRETIEGVVEWVDGDGLWVKGAERSRWVPLEAFTAPHESHPIDNKEEQASAQRDAGES
Ga0207646_100000039F018334GAGVALLNVPVELVVKVTVPVGVTAPVPEASVTVAVHVEATLSNTLAGLQDTVVAEDLIVDANVNAPLLGVCVESPP
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