NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10000006

Scaffold Ga0207646_10000006


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10000006 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)510716
Total Scaffold Genes572 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)414 (72.38%)
Novel Protein Genes23 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (73.91%)
Associated Families22

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000186Metagenome1702Y
F001980Metagenome / Metatranscriptome608Y
F005385Metagenome / Metatranscriptome402Y
F005447Metagenome / Metatranscriptome400Y
F006213Metagenome / Metatranscriptome378N
F008355Metagenome / Metatranscriptome334Y
F008609Metagenome / Metatranscriptome330Y
F009133Metagenome322Y
F009392Metagenome / Metatranscriptome318Y
F010607Metagenome / Metatranscriptome301N
F012566Metagenome / Metatranscriptome279Y
F013177Metagenome273N
F013280Metagenome / Metatranscriptome272Y
F013287Metagenome / Metatranscriptome272N
F014057Metagenome / Metatranscriptome266Y
F015715Metagenome252N
F016136Metagenome / Metatranscriptome249Y
F022166Metagenome215Y
F035707Metagenome / Metatranscriptome171N
F040029Metagenome / Metatranscriptome162Y
F072228Metagenome121N
F081135Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0207646_10000006153F010607AGGMVKVDRYRVVARFARLFPDPAVFEDQDRLVERYLVHSGLPKEKAIYLYQPEGEINPVDDSGKPAVASGAASFRFQGKNIMAEFMPNASLTLEYYDFGTGLSSEDHSRLWKKQRVGEMSFQLRDFGHETQGLNLTNVSELYEMMKKQSQTTSLSSIELAKMPENTFQVTVAYLKSQLRKSSEQDGLEVEVYAARDLSASEKDSLEKRLTRPSTGSTVYVILSKPSQLMKIETS
Ga0207646_10000006156F008609N/AMNRTLLVLGIVLIILGVAGYYVTSQTNLIGGRTHSTYPLGGIALAVLGALIAVGGVMMGKAGSKTSNQFKCAKCGATFGSQVALDQHSKDKHKI
Ga0207646_10000006176F022166AGGALKAKLPRVNFLGVIAGILALISTLLPWWGITATGFGSTTSSIWGFFGGPSRNPDVNNASGFSNTIVTYSPIILALVLLTTALAIAGSFTTRFRFLAGGLVTSIAAVVSYAELVSYTVSNNCQGVACITSSTGSESAFGLTLTWGFQLGFYLFIAATILVVIGLVFHQTLTHREARAEASPKK
Ga0207646_10000006181F009133GGAGMSSDVARLLSKSVDDLYEELGRSLITPDYPSAGSVTRQNAVQRGRSFISGSLEKLRAKICVDWRYCSRRSEYGDFQSLAYAVAPLVSSVVGIPVSTAMIVAIILIKSGLEKLCNCP
Ga0207646_10000006190F081135GGAMVVGLLDKTSFGSSTLTTPQLAIATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFVEFYGEFVEKVAEETLQLVAKGDLASLEGEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSDTKVRALELDPWFKPGTAISEQKESPT
Ga0207646_10000006210F013280AGAAGLKTVRLLIWSAIAYAVLLVLARGVFPSESTPTISLAGIPLIVVVLIIARDLARKSTTPSKKIDAVASKGFQGNPVQFLSGQFRVAATASNSYFEKVVRARLKEILTAKIAIETGQETGIVRRILSDPKRGPMLLQDDSLYRMLYGPTPRAGLARMNMIRDAIDLIGAWKS
Ga0207646_10000006243F035707GGALSSSKPSRRAKSKTFTLHLDTDTIERLTTEAEEQDLSVNVIANRALRKYVEWEVVSEKFQVVSTFSSLLTKLMTWVPEEEARELGRSQWRHEWRTVATSYYQDHGIEPRIRILELFGRYGRRFQFDQATIGSTRILTLLHGMGRKWSLFYEGMLEAMLSEALESGGTLETMLSESLEGKAKRFSLTSTDNQVVAEIALDPLKSLQPPVDDIFKRIRVPLSRRDRQTYRSSDLSPIA
Ga0207646_10000006248F005447GAGMLNRKRLVVFALVFAMFLAAIPSSTPRVYGAAAPCNPLKKCSIAILSPGGALNTNHTVNPSFLVSFLVHNFTLIQPGQTSDVNTTSAGNNEGHIHVWVDGQYVTIWTSTNGIPLSLAPGSHTIRLDLVNDLHQTFNPGINATTTVNVLDPNAQLQSTANNAQGNASNAMYYSLGALILSLISVILVAYVAFKPKPKP
Ga0207646_10000006265F012566N/ALSPENAGRIFNPSNFSTSNNNDDNRLCREILESDPAIRVAAFIEGAEVTSYAEAARTKNAFSQSGDLRKQVGFWSSIVTQMARQTDQMFGNTEYVCFTHKALKMVSVPITSRRSLGLSLDRSADPEKIILKILAKFDFGQTV
Ga0207646_10000006295F000186N/AMEQELVIKLQENGIHYQTQVEIPETTADFYFPLDPRPLLVSVDGRVHLGTAQVVKDEELRTLLRKRGYRLLELHYLSYSDKKRDKFYEEILATIGMRSPVC
Ga0207646_10000006301F006213GGAGMRGMPHTVKVERHQNELVVHVALLHGPDAKLPGGVLLHTEGWVDIGYGLKMYLVIGSGNITYHPKQIEEKKSLLQRLFSKKQQPLLEDKGTAS
Ga0207646_10000006303F005385GAGMESRKRRRKRSKRLTSSRYKIRVRYKYHYYRWINTKDYGSFKDIYEKYKDKGYSFWCADLPPEFSSQDGTWTGYRLDGDKTHTASTLKRYGRHKAWVDSSYKFEGKPVILVYNASR
Ga0207646_10000006306F013177GAGLSTDHQPPRIFFNILGGSLTLLSVQLPWMTINGTYPISVEFGGIFAVMFYWALAGAILSFLSRFGGAMTLVGLIGFMGEPYISYRLANPGLGLLLALTGAIMTFAGVRWSIPSGMVRGHEIVGGVLYSVGFLIILTVVVSSFVYGGLFSTGSGQLIVAAPLLLIGVFMTGLGLKLFLTPERRQGLSAF
Ga0207646_10000006318F015715AGGAMDKQATIRTIRASYKIDQVENGWTVSTSDGNMFVFADSRELAEWFCMVVGVPLDEKKPKEDPLELEIRKLVKSYNLVAEDIDKHFVAGHVRQ
Ga0207646_10000006344F008355AGGAGGLKSLRWTAVGLLLLTGIIDFYYGNSNAGFYENLWYVTGGIYIFAAIIIAANIEPHFSQLTVFAYSLFLLSVWATVALETGTGLDAVAYADKAVEAILAVNMVLLFRSSRISINP
Ga0207646_10000006350F000186N/AMEQELAIKLQEDGIRYQTQVEIPVTTADFYFPMQSRPLLVFVDGRVHLGKTQMIKDEELRSLLRKRGYRILEVFYDGYSDKKRDQLYKEIRNCLLTSSS
Ga0207646_10000006385F040029AGCAGGVALAPEFFVLLGVSIFLAASIVSALLDHYLPSILQYLFQGAAGAGLGELLLGQGLNGPTRVWAGIVYLSFALSSLVGMNIRLAIVRRRMNIASIFSQMLTVPVVMISALLLSSFLENGGELVFSTASILTIGTAVLVANLSIFGLLREYSRQGTVGSGGLVSLPNSPLPTLTGNVSPGFAPHPLSGQEEDWEEAPTTKED
Ga0207646_10000006421F013287GGAGMGLSVKPVTIRDETYLKVPKDVGELLRVMASKICSVNFRIDEKECTLIYSFAKSVPDLREEPSDPRLVLAD
Ga0207646_10000006430F009392GAGGLELEYVRLAPGFAREVLEVYENWEGKNKVPIKLRELMMVIEIEVNKLYERGSWDPAATMPKPPTLKDTKLG
Ga0207646_10000006441F014057N/ALVKDKILCFACAVKNIETTFNTYYELQDHLYRDHDMKKDPAMDIFNKYKNPGTKTPTGEK
Ga0207646_1000000658F001980N/AMRSIDYSALRGLKAGAVGGLVGAAVLGVLAGLSAFILDQEVFYVTIATRLGLSSPVLTGWALHFLVGLVAGSIFIAITALLKRFALDTTRKSFWVGLLGGIAIWIVVYVPVADLFAPTDLSNLMFAGGSFIFHLVYGVVTALVSLWLIRRSVKTQVTV
Ga0207646_1000000680F016136GGAGMKRTMTMLLGIFALAISALAVPAVAGAPPTGSVDSSNRVIFNSGSLTGVFEGNVPHVSFYATNQLGRTTYQLNFRALIEFSIGSGEGIYESSMMVARADFDSATWTPSNFYAIKDANTGTTIGMGFNFSLNGPMQIVEQTPPPQSLKPGDVVLVVKAYNNTKIITVNGQSVTINTAEIKIDFVLKNWPFVSTSDKLALQVNLHSDYNHFDLDQSTGTTAVDATNDEGAGVMEHPYTETTNAEQDVRYASGPVTSSMNIGFFHFVNTATVTSATGYTQPVPVVASYKAEKDGPETFLKLYLVYPYFPSGSTLVHDPSFGLQGGLPTLYIIAGGAGIAGLAAVLVIRHRHLQIQKFPKSN
Ga0207646_1000000698F072228GGAGVLIGPLGFAARSLHRRGFHSHLAFLGLTMTVATTTFLLLLGQDLASRLGVDSSMRSTFGISWLIFAYLVLALGLIGIVGLLSTSYLVSSMISQRMRDIGVIKAAGALPRRLLAYVTFEALVVIVSSCFVGSLSALLIYSSWSWPNVSLFKQVGPISNAGATILIVVPLISFLLSYMVASFRVRRIVGASSVSAISKQLSNLDLKGLGKPLRIRRLGSAFNLATRNVSRDRGFNKTLLSVGICICLSVIVLSGALVSANTSASYVIRAMPPHVLIVANSNIYNQYVSLGTAFSRTATVSSTDYINEPYIITPQNASAFRSIPGVETVDTRLVTISSITGYVEAHFANNQDTGENINTQIIRNRDRLSPNSHSRSRLE
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