Scaffold Ga0207646

Basic Information
Taxon OID	3300025922 Open in IMG/M
Scaffold ID	Ga0207646_10032506 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207646_10032506 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4722
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4722

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207646_100325062	F004426	N/A	LAQRRHSHPARTVHSVVDDELRVSTHKSIIKTLGRQYADAAQFFVELVVNSWMWGEATKVEIRIPESGSTIEYEEWGNGMDLIDLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLTQAPLEHDGLRIRIRLLTKKPDPVDVKRALLARANVLALRGYGPFEVSVNGEQVKPEELRGSSLLPVNIATEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFEHDSAQWRVFEKAMRGFVKNKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAIVNPRVIPKINMVPGNTRKEIVLGERKHRRGKKHSREATRSVIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVYVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA
Ga0207646_100325066	F013876	AGGAG	LKEDTQLMAADLLGIITTNALIAVFALFLAVATLVRIILFPPRFGPGLGPGLIETTLTFVLFALSVVSIYNLLRLRERYARLQSLAEKLGR
Ga0207646_100325067	F001816	N/A	LPLSPDTKKEAEKRLTVLKMMEVFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVTATMDGRVTHYGRTEAGKVYQQVLDTELNFLDPYTGGEVWKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207646_10032506

Overview

Ecosystem & Geography

Associated Families

Sequences