NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10169109

Scaffold Ga0207646_10169109


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10169109 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1974
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009132Metagenome / Metatranscriptome322N
F031428Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0207646_101691091F009132N/ALSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFTTSEKFMNVPTADINTLELITKSLIPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVIFAGSLVVAWWRVGIAVLRIRVNDSQDPITVKLVSTSKAEAVFKALKG
Ga0207646_101691093F031428N/ALSTVRVGDSDIVKILRGVAVVVAAALMILPAYLNYEIWKAGFNPVVAMAISLQLFAIGIVIFILSVGKGRLAPKSQPQ
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