NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_11100537

Scaffold Ga0207646_11100537


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_11100537 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)699
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004291Metagenome / Metatranscriptome445Y
F007884Metagenome / Metatranscriptome343Y
F010654Metagenome / Metatranscriptome301Y

Sequences

Protein IDFamilyRBSSequence
Ga0207646_111005371F007884N/AESRFWLSYRPYESKNVAREWFIGPALTWLHSQDDRIAGVNQNGSGGDVLLAGITTYVGVRPGMHVWLGMDWDVAHSTGALFMPVRRHISFGITQQFRLHL
Ga0207646_111005372F004291AGGAGGMKTKRIALLVLLGSMVVVPVVQAQIKHIEMRVEGMT
Ga0207646_111005373F010654GAGVKQHLGRQSGVQNVEVSLRDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTARGKIVKDPSGSLALQVAPNRSFAPPKKM
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