NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207681_10016165

Scaffold Ga0207681_10016165


Overview

Basic Information
Taxon OID3300025923 Open in IMG/M
Scaffold IDGa0207681_10016165 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4662
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002416Metagenome561Y
F032806Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0207681_100161653F032806GGAGMRARPVRPNIYLPVVRFGVADSDWFSVLLISCICYLAPVPFGITLLYIPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQHQVKALFSNHRQYRFIPNNRKSEFDRPWITDQQEDARSPPKTSVTINSLLLQHNNSVQEACEENGTAFGL
Ga0207681_100161654F002416GGAGMNHLIQSINAPALSNSCAARIGRRLVTIGFGLKAAHGPVAVILSIALGLVSVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGETVPVDNQF
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