NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207694_10165509

Scaffold Ga0207694_10165509


Overview

Basic Information
Taxon OID3300025924 Open in IMG/M
Scaffold IDGa0207694_10165509 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1788
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCGC AG-212-P17(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F073923Metagenome / Metatranscriptome120Y
F079244Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0207694_101655091F073923GGAMNAKDLSSEIRHISDELKRLEERMKSGPPPEASALSEFRNRIDNVRLTAWSVSELINAEHTKKNPDNVLAFLSAERLRRFEQLVKSLCGDIERGIITVRTDGIQALCESVNDLQRRLVEAIQRRQGSQGRVRLN
Ga0207694_101655092F079244GAGMQISREAEGLRFLGECAPEIGFTPRDILCSTCGRRIDPNIDSQDISLVCLGCGFRKAFWAEADMQVFLAENWNRLRQVCTHPSVTLHHQPKA
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