NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207664_10082204

Scaffold Ga0207664_10082204


Overview

Basic Information
Taxon OID3300025929 Open in IMG/M
Scaffold IDGa0207664_10082204 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2623
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002886Metagenome / Metatranscriptome523Y
F065155Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0207664_100822041F065155GAGMTETALAPVSSLPARVPLVRGHRNRLNSLEALERGFALFRSTFVPEAWRYYTGSVPLVFCFIPMWVMNG
Ga0207664_100822043F002886GGAGGLKSAFQKISRVGSLTGGTKWYLSKDCLLAAKRTMYTVEYRRFYLRDLESIVVWPRRSWRLRLIIPGVFFGIVGASFWQWVNSTTGAIFTGIGLAWILLELALGPTAASRVRTTGVSVDLALVKRTRRARKVLKTIDSAVHASRDVTMHPAVLIPTLQPAGISSPTKSEATTAAASIADASPTNAF
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