Scaffold Ga0207701_10041730

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207701_10041730

Scaffold Ga0207701_10041730

Overview

Basic Information
Taxon OID	3300025930 Open in IMG/M
Scaffold ID	Ga0207701_10041730 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4261
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 69-11	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020724	Metagenome / Metatranscriptome	222	Y
F039366	Metagenome / Metatranscriptome	164	Y
F042463	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207701_100417301	F020724	AGGCGG	MARLATVLDAVSDASLEIGIVQRPVTNIVGTADQDIAQMTALLQNVADELLIDPPYRDQLGDGNWLIDTGGVVRKSRPTADSDIILFDPRLAVDGLKYRFLKAKGLEYGEEQRDFIVR
Ga0207701_100417305	F042463	GGAGG	VPVYVLYEGRLIEKRYRPSPSQHAASELPAPAVQSFEAYESPVETGTISSHRQREKDLHSSGSYDPRDTPASFRSAQNGRRHPR
Ga0207701_100417306	F039366	N/A	MSGSARPNDQMHLPGLGVPVDPWTGFVLPPVIVERLKKLKEAERQFRLVLHELDGTTEGSIPGNRSMKFAFDRIEEAKFWAYDAILGG

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