NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207690_10460131

Scaffold Ga0207690_10460131


Overview

Basic Information
Taxon OID3300025932 Open in IMG/M
Scaffold IDGa0207690_10460131 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1024
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001420Metagenome / Metatranscriptome698Y
F006949Metagenome / Metatranscriptome361Y

Sequences

Protein IDFamilyRBSSequence
Ga0207690_104601311F001420N/ANLDYLRDTEAANGTLADGGTDVAVTKNPRQDVQHAHLHAFYAERGETENHESSALEGYPVIGAGYRAFSAALGSDAVQVESDSGRLAADVSAAARPWGGSYCSYQLGVDGPYWVMPALGTSMDEFNQRLARADGLKAEPDPDLGGAVNLVRPSLAHAERLHAAQRATAGQRASFEDFAVQHGLNTRSLDAGLAPGPPRAP
Ga0207690_104601312F006949AGGMEQEARFQETPRTSGLPGPLRRFADRLDEVRSADIVPMDQVGQVLVELAADEGFFGPLIAQLPSGSPGSRWLIRPERGPRLVLVHRPEGVMGYTHSHRCWVGIAP
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