NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207686_10387412

Scaffold Ga0207686_10387412


Overview

Basic Information
Taxon OID3300025934 Open in IMG/M
Scaffold IDGa0207686_10387412 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1061
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001698Metagenome / Metatranscriptome650Y
F006575Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0207686_103874121F001698AGGAGMAGVVNDIEALAEFRAHLMRFNHDLAENFATIQGHWRELGEIWRDDMYRLFGEALEEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVSRPPEVRGM
Ga0207686_103874122F006575N/ALSLRRAVRPAILAHRLLAGDQERAGMLAAECEDLLYLTRELLKAAGRARILAVVPGPRMPDESGGDRQAQLCEAYADAGLLWAKVVGSSLALAGALIERGEWEDVRALAGFLAGAGEESAATELRIRLGGAVWEEHREHLRTISNNMPPAAIERAINALRALLREVPEEFPDRNREVNCFLPPLASAVYAIMQIQRAEIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFDGICRRPGGLTT
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